IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2007)

Active Learning for Network Estimation

Akaho, Shotaro

Amar, Raheja

Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks

Andrews, Justen

Integrating Drosophila Data to Discover Disease-Related Protein Interactions in Human

Ashlock, Daniel

Evolutionary Parameter Setting of Multi-clustering

Evolving Extremal Epidemic Networks

Assareh, Amin

Extracting Efficient Fuzzy If-Then Rules From Mass Spectra of Blood SamplesTo Early Diagnosis of Ovarian Cancer

Azevedo, Paulo J.

A Closer Look on Protein Unfolding Simulations through Hierarchical Clustering

B

Genetic Regulatory Network Modeling Using Network Component Analysis and Fuzzy Clustering

Bakouie, Fatemeh

Basu, Kalyan

Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes

Bevilacqua, Vitoantonio

Novel Data Mining Techniques in aCGH based Breast Cancer Subtypes Profiling: the Biological Perspective

Bhatnagar, Raj

Efficient and Scalable Motif Discovery using Graph-based Search

Bi, Chengpeng

A Genetic-Based EM Motif-Finding Algorithm for Biological Sequence Analysis

Billings, Stephen A.

Metabolic Flux Estimation from Incomplete Labelling Measurements Using the Expectation/Conditional-Maximisation Algorithm

Billings, Stephen

In vivo Intracellular Metabolite Dynamics Estimation by Sequential Monte Carlo Filter

Boscolo, Riccardo

Inferring Regulatory Interactions between Transcriptional Factors and Genes by Propagating Known Regulatory Links

Brito, Rui M. M.

A Closer Look on Protein Unfolding Simulations through Hierarchical Clustering

Brown, Martin

Feature Sensitivity on Biochemical Signaling Pathways

Buchanan-Carter, Jade

Integrating Drosophila Data to Discover Disease-Related Protein Interactions in Human

Buechlein, Aaron

Mining, Analysis and Prediction of Non-Terminal Protein Acetylation Sites

Burns, Daniel

Hybrid Architecture for Accelerating DNA Codeword Library Searching

C

Operon Prediction in Microbial Genomes Using Decision Tree Approach

Cai, Liming

Cancino, Waldo

Multi-Criterion Phylogenetic Inference using Evolutionary Algorithms

Cazenave, Tristan

Overestimation for Multiple Sequence Alignment

Chandran, Deepak

Computational Prediction of Replication Origins in Herpesviruses

Chang, Dar-jen

Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction

Chang, Hui-Jen

Analysis and Prevention of Dispension Errors by Using Data Mining Techniques

Chang, Lan

Combining Neural Network and Wavelet Transform for Trigger Asynchrony Detection

Chang, Ye-In

An ACGT-Words Tree for Efficient Data Access in Genomic Databases

Chang, Yuchou

Color-Texture Segmentation of Medical Images Based on Local Contrast Information

Che, Dongsheng

Operon Prediction in Microbial Genomes Using Decision Tree Approach

Chen, Bernard

Super Granular SVM Feature Elimination (Super GSVM-FE) Model for Protein Sequence Motif Information Extraction

Chen, Chang-Wen

Combining Neural Network and Wavelet Transform for Trigger Asynchrony Detection

Chen, Chun-Hao

Analysis and Prevention of Dispension Errors by Using Data Mining Techniques

Chen, Hsiao-Ming

Analysis and Prevention of Dispension Errors by Using Data Mining Techniques

Chen, Jia

A Flexible Fully-Multiplicative Orthogonal-Group Based ICA Algorithm

Chen, Jiun-Rung

An ACGT-Words Tree for Efficient Data Access in Genomic Databases

Chen, Lien-Chin

Gene Relation Discovery by Mining Similar Subsequences in Time-Series Microarray Data

Chen, Yi-Hsiung

Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data

Chen, Yuan Yan

Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction

Chern, Jen-Suh

The Difference of Bilateral Limbs Involvement During Trunk Bending and Reaching in Stroke Patients

Cho, Young-Rae

Modularization of Protein Interaction Networks by Incorporating Gene Ontology Annotations

Chung, Pau-Choo

Combining Neural Network and Wavelet Transform for Trigger Asynchrony Detection

Clark, Wyatt

Mining, Analysis and Prediction of Non-Terminal Protein Acetylation Sites

Coomans, Danny

Clustering Microarrays with Predictive Weighted Ensembles

Corliss, George

Cluster Methodology Defines Archetype Sentinel Consomic Rats

Cortellino, Marco

Novel Data Mining Techniques in aCGH based Breast Cancer Subtypes Profiling: the Biological Perspective

Costello, James

Integrating Drosophila Data to Discover Disease-Related Protein Interactions in Human

Cristianini, Nello

Terminator Detection by Support Vector Machine Utilizing a Stochastic Context-Free Grammar

Cruz-Cano, Raul

Computational Prediction of Replication Origins in Herpesviruses

D

Associative Artificial Neural Network for Discovery of Highly Correlated Gene Groups Based on Gene Ontology and Gene Expression

Dai, Xinbin

Dalkilic, Mehmet

Integrating Drosophila Data to Discover Disease-Related Protein Interactions in Human

Das, Sajal

Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes

Davis, Anna

Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks

de Lima, Ana

Multi-Criterion Phylogenetic Inference using Evolutionary Algorithms

Delbem, A.C.B.

Dhanasekaran, Ranjitha

Co-option and Irreducibility in Regulatory Networks for Cellular Pattern Development

Done, Arina

Semantic Analysis of Genome Annotations using Weighting Schemes

Done, Bogdan

Semantic Analysis of Genome Annotations using Weighting Schemes

Dose, Matthias

Towards an Automated Analysis of Neuroleptics' Impact on Human Hand Motor Skills

Dougherty, Edward

Inference of Gene Regulatory Networks using S-System: A Unified Approach

Draghici, Sorin

Semantic Analysis of Genome Annotations using Weighting Schemes

Dube, Marie-Pierre

Gene-Gene Interaction Tests Using SVM and Neural Network Modeling

Dunker, A. Keith

Mining, Analysis and Prediction of Non-Terminal Protein Acetylation Sites

E

A comprehensive study of bidirectional promoters in the human genome

Elnitski, Laura L.

Emili, Andrew

A comparison of computational strategies for multi-label prediction of protein subcellular localizations

F

Prediction of Co-Regulated Gene Groups through Gene Ontology

Famili, Fazel

Fanelli, Theresa

Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks

Feng, Lin

Predicting Peptide Binders of Flexible Lengths with Genetic Annealing Algorithm

Ferreira, Eugenio C.

Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms

Ferreira, Pedro G.

A Closer Look on Protein Unfolding Simulations through Hierarchical Clustering

Flann, Nicholas

Co-option and Irreducibility in Regulatory Networks for Cellular Pattern Development...

Francis-Lyon, Patricia

Terminator Detection by Support Vector Machine Utilizing a Stochastic Context-Free Grammar

Fukumizu, Kenji

Active Learning for Network Estimation

G

A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins

Gallagher, Marcus

Gardner, Timothy

Inferring Regulatory Interactions between Transcriptional Factors and Genes by Propagating Known Regulatory Links

Ghosh, Joydeep

Matching and Visualization of Multiple Overlapping Clustering of Microarray Data

Ghosh, Nirmalya

Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes

Ghosh, Preetam

Ghosh, Samik

Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes

Gladilin, Evgeny

Geometrical probability approach for analyis of 3D chromatin structure in interphase cell nuclei

Goetze, Sandra

Geometrical probability approach for analyis of 3D chromatin structure in interphase cell nuclei

Gray, Joe

Towards an Automated Analysis of Neuroleptics' Impact on Human Hand Motor Skills

Gruber, Christian

Grunz, Ariane

Towards an Automated Analysis of Neuroleptics' Impact on Human Hand Motor Skills

Gubbi, Jayavardhana

Real Value Solvent Accessibility Prediction using Adaptive Support Vector Regression

Gubitoso, Marco

A Framework for Discrete Modeling of Juxtacrine Signaling Systems

Guo, Ling

Evolutionary Parameter Setting of Multi-clustering

H

Motifs and Modules in Fractured Functional Yeast Networks

Hallinan, Jennifer

Harrison, Robert

Super Granular SVM Feature Elimination (Super GSVM-FE) Model for Protein Sequence Motif Information Extraction

Understanding the Prediction of Transmembrane Proteins by Support Vector Machine using Association Rule Mining

He, Ji

Associative Artificial Neural Network for Discovery of Highly Correlated Gene Groups Based on Gene Ontology and Gene Expression

Heiser, Laura

Herzog, Andreas

Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data

Ho, Shinn-Ying

Holbrook, Stephen

Terminator Detection by Support Vector Machine Utilizing a Stochastic Context-Free Grammar

Hook, Christian

Towards an Automated Analysis of Neuroleptics' Impact on Human Hand Motor Skills

Hu, Hae-Jin

Understanding the Prediction of Transmembrane Proteins by Support Vector Machine using Association Rule Mining

Hu, Jen-Wei

An ACGT-Words Tree for Efficient Data Access in Genomic Databases

Hu, Pingzhao

A comparison of computational strategies for multi-label prediction of protein subcellular localizations

Huang, Hui-Ling

Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data

Hwang, Woochang

Modularization of Protein Interaction Networks by Incorporating Gene Ontology Annotations

I

Cost-sensitive Fuzzy Classification for Medical Diagnosis

Ishibuchi, Hisao

Ismail, Mohamed

Discovering Connected Patterns in Gene Expression Arrays

J

Evolving Extremal Epidemic Networks

Jafargholi, Fatemeh

Jiang, Hui

A comparison of computational strategies for multi-label prediction of protein subcellular localizations

K

In vivo Intracellular Metabolite Dynamics Estimation by Sequential Monte Carlo Filter

Kadirkamanathan, Visakan

Metabolic Flux Estimation from Incomplete Labelling Measurements Using the Expectation/Conditional-Maximisation Algorithm

Kamel, Mohamed

Discovering Connected Patterns in Gene Expression Arrays

Kempf, Juergen

Towards an Automated Analysis of Neuroleptics' Impact on Human Hand Motor Skills

Khatri, Purvesh

Semantic Analysis of Genome Annotations using Weighting Schemes

Koeberl, Dwight D.

Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data

Kothari, Moulik

An Experimental Evaluation of Inversion- and Transposition-Based Genomic Distances through Simulations

Krumpelman, Chase

Matching and Visualization of Multiple Overlapping Clustering of Microarray Data

Kube, Karsten

Evolutionary-Progressive Method for Multiple Sequence Alignment

Kupis, Pawel

L

Color-Texture Segmentation of Medical Images Based on Local Contrast Information

Lee, Dah-Jye

Leung, Ming-Ying

Computational Prediction of Replication Origins in Herpesviruses

Li, Jianling

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches

Li, Kuochen

Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction

Liu, Jian-Jie

Gene Relation Discovery by Mining Similar Subsequences in Time-Series Microarray Data

Livesay, Dennis

Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks

Lo, Chen-Yu

The Difference of Bilateral Limbs Involvement During Trunk Bending and Reaching in Stroke Patients

Long, Chi-Wen

The Difference of Bilateral Limbs Involvement During Trunk Bending and Reaching in Stroke Patients

Luo, Zuojie

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches

M

A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins

Maetschke, Stefan

Mandziuk, Jacek

Evolutionary-Progressive Method for Multiple Sequence Alignment

Matchenko-Shimko, Nelli

Gene-Gene Interaction Tests Using SVM and Neural Network Modeling

Mateos-Langerak, Jose

Geometrical probability approach for analyis of 3D chromatin structure in interphase cell nuclei

Matioli, Sergio

A Framework for Discrete Modeling of Juxtacrine Signaling Systems

Menolascina, Filippo

Novel Data Mining Techniques in aCGH based Breast Cancer Subtypes Profiling: the Biological Perspective

Michaelis, Bernd

A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins

Mikael, Boden

Moradi, Mohammad Hasan

Extracting Efficient Fuzzy If-Then Rules From Mass Spectra of Blood SamplesTo Early Diagnosis of Ovarian Cancer

Moradi, Mohammad. Hassan

Genetic Regulatory Network Modeling Using Network Component Analysis and Fuzzy Clustering

Moret, Bernard M.E.

An Experimental Evaluation of Inversion- and Transposition-Based Genomic Distances through Simulations

Motsinger, Alison

Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks

Mukre, Prakash

Hybrid Architecture for Accelerating DNA Codeword Library Searching

Murray, Alison

N

Cost-sensitive Fuzzy Classification for Medical Diagnosis

Nakashima, Tomoharu

Nasser, Sara

Nicolescu, Monica

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches

Niemierko, Andrzej

P

Real Value Solvent Accessibility Prediction using Adaptive Support Vector Regression

Palaniswami, Marimuthu

Pan, Yi

Super Granular SVM Feature Elimination (Super GSVM-FE) Model for Protein Sequence Motif Information Extraction

Understanding the Prediction of Transmembrane Proteins by Support Vector Machine using Association Rule Mining

Pan, Youlian

Prediction of Co-Regulated Gene Groups through Gene Ontology

Pande, Swati

Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks

Papadopoulos, George

Feature Sensitivity on Biochemical Signaling Pathways

Paradiso, Angelo

Novel Data Mining Techniques in aCGH based Breast Cancer Subtypes Profiling: the Biological Perspective

Parker, Michael

Real Value Solvent Accessibility Prediction using Adaptive Support Vector Regression

Parvin, Bahram

Super Granular SVM Feature Elimination (Super GSVM-FE) Model for Protein Sequence Motif Information Extraction

Pellicer, Stephen

Phan, Sieu

Prediction of Co-Regulated Gene Groups through Gene Ontology

Pinto, Jose P.

Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms

Podgorski, Gregory

Co-option and Irreducibility in Regulatory Networks for Cellular Pattern Development...

Pooja, Pooja

Comparison of Human and Mouse Pseudogenes

Popescu,, Mihail

GoFuzzKegg: Mapping Genes to KEGG Pathways Using an Ontological Fuzzy Rule System

Q

Inference of Gene Regulatory Networks using S-System: A Unified Approach

Qian, Lijun

Qiu, Qinru

Hybrid Architecture for Accelerating DNA Codeword Library Searching

R

Mining, Analysis and Prediction of Non-Terminal Protein Acetylation Sites

Radivojac, Predrag

Rajapakse, Jagath

Comparison of Human and Mouse Pseudogenes

Rajapakse, Menaka

Predicting Peptide Binders of Flexible Lengths with Genetic Annealing Algorithm

Reif, David

Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks

Ritchie, Marylyn

Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks

Rocha, Isabel

Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms

Rocha, Miguel

Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms

Rohr, Karl

Geometrical probability approach for analyis of 3D chromatin structure in interphase cell nuclei

Rouchka, Eric

Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction

Roychowdhury, Vwani

Inferring Regulatory Interactions between Transcriptional Factors and Genes by Propagating Known Regulatory Links

Rozante, Luiz

A Framework for Discrete Modeling of Juxtacrine Signaling Systems

S

Cost-sensitive Fuzzy Classification for Medical Diagnosis

Schaefer, Gerald

Seitz, Martin

Cluster Methodology Defines Archetype Sentinel Consomic Rats

Shaik, Jahangheer

Two-way Clustering using Fuzzy ASI for Knowledge Discovery in Microarrays

Shilton, Alistair

Real Value Solvent Accessibility Prediction using Adaptive Support Vector Regression

Sichtig, Heike

Building Smart Machines by Utilizing Spiking Neural Networks

Silva, Candida G.

A Closer Look on Protein Unfolding Simulations through Hierarchical Clustering

Sinha, Amit

Efficient and Scalable Motif Discovery using Graph-based Search

Smith, Marc

Reconsidering the Performance of Cooperative Rec-I-DCM3

Smith, Scott

RNA Gene Finding with Biased Mutation Operators

Smyth, Christine

Clustering Microarrays with Predictive Weighted Ensembles

Sobczak, Nancy

Cluster Methodology Defines Archetype Sentinel Consomic Rats

Spellman, Paul

T

Super Granular SVM Feature Elimination (Super GSVM-FE) Model for Protein Sequence Motif Information Extraction

Tai, Phang C.

Understanding the Prediction of Transmembrane Proteins by Support Vector Machine using Association Rule Mining

Tang, Zuojian

Prediction of Co-Regulated Gene Groups through Gene Ontology

Taylor, Erik

GoFuzzKegg: Mapping Genes to KEGG Pathways Using an Ontological Fuzzy Rule System

Tommasi, Stefania

Novel Data Mining Techniques in aCGH based Breast Cancer Subtypes Profiling: the Biological Perspective

Tonellato, Peter

Cluster Methodology Defines Archetype Sentinel Consomic Rats

Tsang, Herbert H.

SARNA-Predict: A Study of RNA Secondary Structure Prediction Using Different Annealing Schedules

Tseng, Vincent S.

Analysis and Prevention of Dispension Errors by Using Data Mining Techniques

Gene Relation Discovery by Mining Similar Subsequences in Time-Series Microarray Data

V

Geometrical probability approach for analyis of 3D chromatin structure in interphase cell nuclei

van Driel, Roel

Vert, Gregory

Voigt, Thomas

W

A Flexible Fully-Multiplicative Orthogonal-Group Based ICA Algorithm

Wan, Jing

Wang, Haixin

Inference of Gene Regulatory Networks using S-System: A Unified Approach

Wang, Hao

Understanding the Prediction of Transmembrane Proteins by Support Vector Machine using Association Rule Mining

Wang, Yong-Gang

Color-Texture Segmentation of Medical Images Based on Local Contrast Information

Wiese, Kay C.

SARNA-Predict: A Study of RNA Secondary Structure Prediction Using Different Annealing Schedules

Williams, Tiffani

Reconsidering the Performance of Cooperative Rec-I-DCM3

Wipat, Anil

Motifs and Modules in Fractured Functional Yeast Networks

Wongsa, Sarawan

Metabolic Flux Estimation from Incomplete Labelling Measurements Using the Expectation/Conditional-Maximisation Algorithm

Wright, Phillip

Metabolic Flux Estimation from Incomplete Labelling Measurements Using the Expectation/Conditional-Maximisation Algorithm

Wu, Lei

A Flexible Fully-Multiplicative Orthogonal-Group Based ICA Algorithm

Wu, Qing

Hybrid Architecture for Accelerating DNA Codeword Library Searching

X

GoFuzzKegg: Mapping Genes to KEGG Pathways Using an Ontological Fuzzy Rule System

Xu, Dong

Xu, Ying

Operon Prediction in Microbial Genomes Using Decision Tree Approach

Y

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches

Yang, Jack

Yang, Jing

In vivo Intracellular Metabolite Dynamics Estimation by Sequential Monte Carlo Filter

Yang, Mary

A comprehensive study of bidirectional promoters in the human genome

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches

Yang, Saiwei

The Difference of Bilateral Limbs Involvement During Trunk Bending and Reaching in Stroke Patients

Yang, Zheng

Neural Network as Crosstalk Models, an Example in Adrenaline and Insulin Signalling Pathways

Ye, Yalan

A Flexible Fully-Multiplicative Orthogonal-Group Based ICA Algorithm

Yeasin, Mohammed

Two-way Clustering using Fuzzy ASI for Knowledge Discovery in Microarrays

Yedida, Sundeep

Channel Selection in EEG-based Prediction of Shoulder/Elbow Movement Intentions involving Stroke Patients: A Computational Approach

Yeh, Wei-Horng

An ACGT-Words Tree for Efficient Data Access in Genomic Databases

Yokota, Yasuyuki

Cost-sensitive Fuzzy Classification for Medical Diagnosis

Young, Natasha

Neural Network as Crosstalk Models, an Example in Adrenaline and Insulin Signalling Pathways

Yousri, Noha

Discovering Connected Patterns in Gene Expression Arrays

Yu, Chin-Tai

Analysis and Prevention of Dispension Errors by Using Data Mining Techniques

Z