Alison Motsinger, David Reif, Theresa Fanelli, Anna Davis and Marylyn Ritchie
Filippo Menolascina, Stefania Tommasi, Angelo Paradiso, Marco Cortellino and Vitoantonio Bevilacqua
Ji He, Xinbin Dai and Xuechun Zhao
Evolutionary Parameter Setting of Multi-clustering...25
Daniel Ashlock and Ling Guo
Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data...32
Hui-Ling Huang, Yi-Hsiung Chen, Dwight D. Koeberl and Shinn-Ying Ho
Two-way Clustering using Fuzzy ASI for Knowledge Discovery in Microarrays...39
Jahangheer Shaik and Mohammed Yeasin
Jack Yang, Mary Yang, Zuojie Luo, Andrzej Niemierko and Jianling Li
Cluster Methodology Defines Archetype Sentinel Consomic Rats...54
Nancy Sobczak, George Corliss, Martin Seitz and Peter Tonellato
Combining Neural Network and Wavelet Transform for Trigger Asynchrony Detection...58
Lan Chang, Pau-Choo Chung and Chang-Wen Chen
Analysis and Prevention of Dispension Errors by Using Data Mining Techniques...65
Vincent S. Tseng, Chun-Hao Chen, Hsiao-Ming Chen, Hui-Jen Chang and Chin-Tai Yu
Neural Network as Crosstalk Models, an Example in Adrenaline and Insulin Signalling Pathways...71
Natasha Young and Zheng Rong Yang
Spectral Decomposition of Signaling Networks...76
Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Joe Gray and Paul Spellman
Inference of Gene Regulatory Networks using S-System: A Unified Approach...82
Haixin Wang, Lijun Qian and Edward Dougherty
Gene-Gene Interaction Tests Using SVM and Neural Network Modeling...90
Nelli Matchenko-Shimko and Marie-Pierre Dube
Clustering Microarrays with Predictive Weighted Ensembles...98
Christine Smyth and Danny Coomans
Gene Relation Discovery by Mining Similar Subsequences in Time-Series Microarray Data...106
Vincent S. Tseng, Lien-Chin Chen and Jian-Jie Liu
Discovering Connected Patterns in Gene Expression Arrays...113
Noha Yousri, Mohamed Ismail and Mohamed Kamel
Matching and Visualization of Multiple Overlapping Clustering of Microarray Data...121
Chase Krumpelman and Joydeep Ghosh
Geometrical probability approach for analyis of 3D chromatin structure in interphase cell nuclei...127
Evgeny Gladilin, Sandra Goetze, Jose Mateos-Langerak, Roel van Driel and Karl Rohr
Operon Prediction in Microbial Genomes Using Decision Tree Approach...135
Dongsheng Che, Jizhen Zhao, Liming Cai and Ying Xu
An ACGT-Words Tree for Efficient Data Access in Genomic Databases...143
Ye-In Chang, Wei-Horng Yeh, Jiun-Rung Chen and Jen-Wei Hu
Moulik Kothari and Bernard M.E. Moret
Overestimation for Multiple Sequence Alignment...159
Tristan Cazenave
Kuochen Li, Dar-jen Chang, Eric Rouchka and Yuan Yan Chen
Terminator Detection by Support Vector Machine Utilizing a Stochastic Context-Free Grammar...170
Patricia Francis-Lyon, Nello Cristianini and Stephen Holbrook
Prediction of Co-Regulated Gene Groups through Gene Ontology...178
Zuojian Tang, Sieu Phan, Youlian Pan and Fazel Famili
Genetic Regulatory Network Modeling Using Network Component Analysis and Fuzzy Clustering...185
Fatemeh Bakouie and Mohammad. Hassan Moradi
Motifs and Modules in Fractured Functional Yeast Networks...189
Jennifer Hallinan and Anil Wipat
Efficient and Scalable Motif Discovery using Graph-based Search...197
Amit Sinha and Raj Bhatnagar
Qian Zhong, Riccardo Boscolo, Timothy Gardner and Vwani Roychowdhury
Semantic Analysis of Genome Annotations using Weighting Schemes...212
Bogdan Done, Purvesh Khatri, Arina Done and Sorin Draghici
Comparison of Human and Mouse Pseudogenes...219
Pooja Pooja and Jagath Rajapakse
Reconsidering the Performance of Cooperative Rec-I-DCM3...225
Tiffani Williams and Marc Smith
Modularization of Protein Interaction Networks by Incorporating Gene Ontology Annotations...233
Young-Rae Cho, Woochang Hwang and Aidong Zhang
SARNA-Predict: A Study of RNA Secondary Structure Prediction Using Different Annealing Schedules...239
Herbert H. Tsang and Kay C. Wiese
Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks...247
Swati Pande, Raheja Amar and Dennis Livesay
A comprehensive study of bidirectional promoters in the human genome...254
Mary Qu Yang and Laura L. Elnitski
Predicting Peptide Binders of Flexible Lengths with Genetic Annealing Algorithm...262
Menaka Rajapakse and Lin Feng
RNA Gene Finding with Biased Mutation Operators...268
Scott Smith
A Genetic-Based EM Motif-Finding Algorithm for Biological Sequence Analysis...275
Chengpeng Bi
Computational Prediction of Replication Origins in Herpesviruses...283
Raul Cruz-Cano, Deepak Chandran and Ming-Ying Leung
Evolutionary-Progressive Method for Multiple Sequence Alignment...291
Pawel Kupis and Jacek Mandziuk
GoFuzzKegg: Mapping Genes to KEGG Pathways Using an Ontological Fuzzy Rule System...298
Mihail Popescu,, Dong Xu and Erik Taylor
Multiple Sequence Alignment using Fuzzy Logic...304
Sara Nasser, Gregory Vert, Monica Nicolescu and Alison Murray
Cost-sensitive Fuzzy Classification for Medical Diagnosis...312
Gerald Schaefer, Tomoharu Nakashima, Yasuyuki Yokota and Hisao Ishibuchi
Bernard Chen, Stephen Pellicer, Phang C. Tai, Robert Harrison and Yi Pan
Hybrid Architecture for Accelerating DNA Codeword Library Searching...323
Qinru Qiu, Daniel Burns, Qing Wu and Prakash Mukre
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms...331
Miguel Rocha, Jose P. Pinto, Isabel Rocha and Eugenio C. Ferreira
Evolving Extremal Epidemic Networks...338
Daniel Ashlock and Fatemeh Jafargholi
Building Smart Machines by Utilizing Spiking Neural Networks...346
Heike Sichtig
Multi-Criterion Phylogenetic Inference using Evolutionary Algorithms...351
Waldo Cancino and A.C.B. Delbem
A Framework for Discrete Modeling of Juxtacrine Signaling Systems...359
Luiz Rozante, Marco Gubitoso and Sergio Matioli
A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins...367
Stefan Maetschke, Marcus Gallagher and Boden Mikael
Feature Sensitivity on Biochemical Signaling Pathways...373
George Papadopoulos and Martin Brown
Pingzhao Hu, Hui Jiang, and Andrew Emili
In vivo Intracellular Metabolite Dynamics Estimation by Sequential Monte Carlo Filter...387
Jing Yang, Visakan Kadirkamanathan and Stephen Billings
Real Value Solvent Accessibility Prediction using Adaptive Support Vector Regression...395
Jayavardhana Gubbi, Alistair Shilton, Marimuthu Palaniswami and Michael Parker
Active Learning for Network Estimation...402
Shotaro Akaho and Kenji Fukumizu
Sarawan Wongsa, Visakan Kadirkamanathan, Stephen A. Billings and Phillip Wright
Hae-Jin Hu, Hao Wang, Robert Harrison, Phang C. Tai and Yi Pan
Synchronization in Complex Dynamical Networks...426
Karsten Kube, Andreas Herzog, Bernd Michaelis, Ana de Lima and Thomas Voigt
Co-option and Irreducibility in Regulatory Networks for Cellular Pattern Development...432
Ranjitha Dhanasekaran, Gregory Podgorski and Nicholas Flann
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes...439
Preetam Ghosh, Samik Ghosh, Kalyan Basu and Sajal Das
Mining, Analysis and Prediction of Non-Terminal Protein Acetylation Sites...447
Wyatt Clark, Aaron Buechlein, A. Keith Dunker and Predrag Radivojac
Jie Zhou and Sundeep Yedida
A Closer Look on Protein Unfolding Simulations through Hierarchical Clustering...461
Pedro G. Ferreira, Candida G. Silva, Rui M. M. Brito and Paulo J. Azevedo
Integrating Drosophila Data to Discover Disease-Related Protein Interactions in Human...469
James Costello, Jade Buchanan-Carter, Mehmet Dalkilic and Justen Andrews
A Flexible Fully-Multiplicative Orthogonal-Group Based ICA Algorithm...476
Yalan Ye, Jing Wan, Zhi-Lin Zhang, Jia Chen and Lei Wu
The Difference of Bilateral Limbs Involvement During Trunk Bending and Reaching in Stroke Patients...480
Jen-Suh Chern, Saiwei Yang, Chi-Wen Long and Chen-Yu Lo
Color-Texture Segmentation of Medical Images Based on Local Contrast Information...488
Yuchou Chang, Dah-Jye Lee and Yong-Gang Wang
Towards an Automated Analysis of Neuroleptics' Impact on Human Hand Motor Skills...494
Matthias Dose, Christian Gruber, Ariane Grunz, Christian Hook and Juergen Kempf
Amin Assareh and Mohammad Hasan Moradi